This research reviews the Skater package as an R package for single nucleotide polymorphism (SNP) based kinship analysis, testing, and evaluation.
SNP-based kinship analysis with genome-wide relationship estimation and IBD segment analysis methods produces results that often require further downstream processing and manipulation. A dedicated software package that consistently and intuitively implements this analysis functionality is needed. Here the authors present the Skater R package for SNP-based kinship analysis, testing, and evaluation with R. The skater package contains a suite of well-documented tools for importing, parsing, and analyzing pedigree data, performing relationship degree inference, benchmarking relationship degree classification, and summarizing IBD segment data. The Skater package is implemented as an R package and is released under the MIT license at https://github.com/signaturescience/skater. Documentation is available at https://signaturescience.github.io/skater.
Downloads
Similar Publications
- PROSPER Partnership Delivery System: Effects on Adolescent Conduct Problem Behavior Outcomes through 6.5 Years Past Baseline
- Teaching Adolescents About Alcohol and Driving: A 2-Year Follow-Up
- Desistance and Legitimacy: The Impact of Offender Notification Meetings on Recidivism Among High-Risk Offenders