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Fully integrated, fully automated generation of short tandem repeat profiles

NCJ Number
Investigative Genetics Volume: 4 Issue: 16 Dated: 2011
Eugene Tan; Rosemary S. Turingan; Catherine Hogan; Sameer Vasantgadkar; Luke Palombo; James W. Schumm; Richard F. Selden
Date Published
0 pages

Since the generation of short tandem repeat profiles, also referred to as ‘DNA typing,’ is not currently performed outside the laboratory because the process requires highly skilled technical operators and a controlled laboratory environment and infrastructure with several specialized instruments, the current study aimed to develop a fully integrated system for the automated generation of short tandem repeat profiles from buccal swab samples; to improve forensic laboratory process flow; and to enable short tandem repeat profile generation to be performed in police stations and in field-forward military, intelligence, and homeland security settings.


The integrated system developed consists of an injection-molded microfluidic BioChipSet cassette, a ruggedized instrument, and expert system software. For each of five buccal swabs, the system purifies DNA using guanidinium-based lysis and silica binding, amplifies 15 short tandem repeat loci and the amelogenin locus, electrophoretically separates the resulting amplicons, and generates a profile. No operator processing of the samples is required, and the time from swab insertion to profile generation is 84 minutes. All required reagents are contained within the BioChipSet cassette; these consist of a lyophilized polymerase chain reaction mix and liquids for purification and electrophoretic separation. The profiles obtained from fully automated runs demonstrate that the integrated system generates concordant short tandem repeat profiles. The system exhibits single-base resolution from 100 to greater than 500 bases, with inter-run precision with a standard deviation of ±0.05 - 0.10 bases for most alleles. The reagents are stable for at least 6 months at 22°C, and the instrument has been designed and tested to Military Standard 810F for shock and vibration ruggedness. A nontechnical user can operate the system within or outside the laboratory. This integrated system is the first generation of a turnkey approach to short tandem repeat profiling and has the potential for use in both the field (for example, police booking stations, the battlefield, borders, and ports) and the forensic laboratory. (publisher abstract modified)